Chocolate Cherry Thumbprint Cookies

Section: Sweet Endings

These chocolate cherry thumbprints feature a deeply fudgy cookie base made with Dutch-process cocoa and a blend of brown and white sugars. Each cookie is pressed to create an inviting indentation, then baked to hold its shape. The real delight comes from the silky ganache filling, made with dark chocolate and cherry preserves for a burst of fruity richness. Assembly is simple—every cooled cookie gets a generous spoonful of ganache, chilled just until set. Perfect for gatherings or special treats, these cookies combine classic flavors for an irresistible bite-sized indulgence.

Sweet by Emma official logo
Created By Emma
Updated last on Sun, 23 Nov 2025 19:47:25 GMT
A stack of chocolate cookies with cherries on top. Save
A stack of chocolate cookies with cherries on top. | sweetbyemma.com

Nothing satisfies a chocolate craving quite like these chocolate cherry cookies They start with a deeply fudgy chocolate thumbprint cookie and are filled with a luscious chocolate cherry ganache that feels decadent enough for a celebration yet easy enough to whip up on a cozy night in

I fell for these cookies the first time I made them for a family birthday My sister declared them better than any bakery treat she ever had and now they are our new holiday tradition

Ingredients

  • All purpose flour: creates the tender yet sturdy base for the cookies Make sure to spoon and level for accurate measurement
  • Dutch process cocoa powder: imparts a rich and deep chocolate taste Opt for a high quality brand for best results
  • Baking powder: provides a little lift for a soft but thick texture Fresh leavening works best
  • Sea salt: sharpens the flavor and balances the sweetness Use a flaky or fine sea salt not table salt
  • Unsalted butter: brings richness and lets you control the salt in the dough Softened butter creams best with sugar
  • Light brown sugar: adds moisture and a subtle caramel note Choose soft fresh brown sugar for the best crumb
  • Granulated white sugar: balances the brown sugar for classic crisp edges
  • Egg yolks: give a fudgy and tender bite To separate cleanly use chilled eggs and let yolks warm before mixing
  • Vanilla extract: rounds out all the flavors with warmth Real vanilla extract makes a noticeable difference
  • Chocolate for ganache: Use a bar you love to eat I am partial to Endangered Species Cherries Dark Chocolate for both flavor and ethics
  • Heavy cream: creates a silky and rich ganache Choose heavy cream with minimal additives for smooth melting
  • Cherry preserves: bring bright fruity zing Look for preserves with visible cherry pieces and a natural label

Instructions

Mix Dry Ingredients:
In a medium mixing bowl whisk together the flour cocoa powder baking powder and sea salt until thoroughly blended This ensures the cocoa and salt get evenly distributed throughout the dough
Cream Butter and Sugars:
In your largest mixing bowl use an electric mixer to cream the unsalted butter light brown sugar and white sugar on high speed for three minutes Scrape the bowl as needed The butter should look light and fluffy This step creates the cookie’s classic bite and flavor
Add Yolks and Vanilla:
Add the egg yolks and vanilla extract to the butter mixture Beat on medium until fully combined and airy about two minutes This brings rich flavor and structure
Combine Wet and Dry Ingredients:
On low speed mix the dry ingredients into the wet just until no flour streaks remain Be gentle to keep cookies tender
Shape and Chill:
Scoop the dough into thirty two portions with a tablespoon size scoop Roll each one gently between your palms to form balls Press a quarter teaspoon into each to create a thumbprint shaped indent Place them on a tray and refrigerate for an hour This helps them hold shape in the oven
Bake the Cookies:
Fifteen minutes before baking preheat your oven to three hundred fifty degrees Fahrenheit Line two baking sheets with parchment Arrange eight cookies per sheet so they have room to spread Bake for nine to eleven minutes Their edges will set but centers look soft
Refine Indent and Cool:
While cookies are hot gently press the center down again with a quarter teaspoon The shape may have puffed up a bit in baking Optionally scoot a round cutter around each cookie to sharpen the edges Cool cookies on the baking sheet for five minutes then transfer to a wire rack to finish cooling
Make Ganache:
Put chopped chocolate in a medium bowl Heat the heavy cream in a small saucepan just until steaming but not boiling Pour the hot cream over the chocolate Wait thirty seconds then stir until melted and glossy Mix in the cherry preserves until you have a smooth ganache
Fill and Set:
Once the cookies are cool fill each center with about one teaspoon of ganache Smooth or swirl with a spoon if you like Chill filled cookies in the fridge ten to fifteen minutes so the ganache sets
Store:
Keep cookies in an airtight container at room temperature for up to three days or in the fridge if your kitchen is especially warm
Chocolate chip cookies with chocolate drizzle and red berries on top.
Chocolate chip cookies with chocolate drizzle and red berries on top. | sweetbyemma.com

They taste even better the day after baking The combination of cherry preserves and dark chocolate in the ganache is my absolute favorite part It reminds me of sharing chocolate covered cherries with my grandmother on winter evenings There is something so nostalgic about this flavor pairing

Storage Tips

Store cookies in an airtight container lined with parchment so the ganache does not smudge Keep them at room temperature for up to three days Avoid stacking if you want the ganache tops to look perfect You can also store them in the fridge for a firmer bite Just let them come to room temp before serving for the best flavor

Ingredient Substitutions

Swap regular cocoa powder for Dutch process if that is what you have though the flavor and color will be slightly lighter If you cannot find cherry preserves try raspberry or apricot for a fun twist For dairy free use a vegan butter and coconut cream in the ganache

Serving Suggestions

These cookies make a stunning addition to holiday cookie trays Enjoy them with hot cocoa or coffee I also love serving them slightly chilled with a glass of red wine for a grown up treat You can even sprinkle a pinch of flaky sea salt on the ganache before it sets for a finishing touch

Cultural and Historical Context

Chocolate and cherry is a classic flavor pairing in European desserts such as Black Forest cake These cookies offer a playful take on that tradition in thumbprint cookie form which traces its roots to Sweden where they are called hallongrotta or raspberry caves

Seasonal Adaptations

Bake these at Valentine’s Day for a romantic gesture Swap in berry or plum preserves for summer fruit flavor Add a hint of almond extract to the cookie dough in the winter for a cozy twist

Success Stories

Many readers love making a double batch and freezing half Some tell me their kids ask for these every snow day A neighbor once traded a loaf of homemade bread for a box of these rich cookies

Freezer Meal Conversion

You can freeze unbaked dough balls with indents for up to three months When ready to bake let them sit on the counter as the oven preheats then bake as directed Freeze finished cookies in a single layer then thaw and fill with ganache after defrosting for the freshest taste

Chocolate chip cookies with chocolate drizzle and red berries on top.
Chocolate chip cookies with chocolate drizzle and red berries on top. | sweetbyemma.com

Every batch of these cookies has turned out rich and irresistible They are sure to become a treasured part of your baking lineup too

FAQs for This Recipe

→ How do I get a perfect thumbprint shape?

Press the dough balls gently with a measuring spoon and reshape with a round cutter after baking while warm.

→ Can I substitute the cherry preserves?

Feel free to use raspberry or strawberry preserves for a different fruity twist in the ganache filling.

→ Why chill the dough before baking?

Chilling prevents spreading, ensuring cookies hold their shape and the indent stays defined for filling.

→ How should the cookies be stored?

Keep them in an airtight container at room temperature for up to three days for maximum freshness.

→ Can I make the dough ahead of time?

Yes, shape and chill the dough balls up to a day ahead; bake straight from the fridge for best results.

Chocolate Cherry Thumbprint Cookies

Rich chocolate thumbprints filled with cherry ganache for a decadent, fruity treat. Yields 32.

Preparation Time
30 minutes
Time to Cook
10 minutes
Overall Time
40 minutes
Created By: Emma

Recipe Type: Desserts

Difficulty Level: Moderate Effort

Type of Cuisine: American

Portion Count: 32 cookies

Dietary Choices: Vegetarian-Friendly

Ingredients You’ll Need

→ Chocolate Cookie Dough

01 188 g all-purpose flour
02 40 g Dutch-process cocoa powder
03 0.5 tsp baking powder
04 0.5 tsp sea salt
05 168 g unsalted butter, softened
06 165 g light brown sugar, packed
07 50 g granulated white sugar
08 2 egg yolks, room temperature
09 1.5 tsp vanilla extract

→ Chocolate Cherry Ganache

10 140 g dark chocolate with dried cherries, chopped
11 90 ml heavy cream
12 85 g cherry preserves

How to Make It

Step 01

In a medium mixing bowl, whisk together the flour, cocoa powder, baking powder, and sea salt until well blended.

Step 02

In a large bowl, cream the softened butter, light brown sugar, and granulated sugar using an electric mixer at high speed until pale and fluffy.

Step 03

Add egg yolks and vanilla extract to the creamed mixture and beat on medium speed until light and smooth, about 1–2 minutes.

Step 04

Add the dry mixture to the wet ingredients and mix on low speed just until a dough forms.

Step 05

Portion the dough into 32 tablespoon-sized balls. Roll smooth, then use a 1/4 teaspoon to press an indent in the center of each ball.

Step 06

Arrange the shaped dough on parchment-lined trays and chill for 60 minutes.

Step 07

Fifteen minutes before baking, preheat the oven to 175°C.

Step 08

Place 8 cookies per prepared baking sheet and bake for 9–11 minutes until set but fudgy. Remove from oven and gently re-press the indents if needed.

Step 09

While cookies are hot, use a round cookie cutter to gently scoot each into a tidy circular shape. Let cool on the sheet for 5 minutes, then transfer to a wire rack to cool completely.

Step 10

Place chopped chocolate in a medium bowl. Heat heavy cream until just before boiling and pour over the chocolate. Let sit briefly, then stir until smooth.

Step 11

Mix cherry preserves into the warm ganache until fully incorporated.

Step 12

Once cookies have cooled, fill each center with about 1 teaspoon of chocolate-cherry ganache.

Step 13

Chill cookies in the refrigerator for 10–15 minutes to set the ganache. Store in an airtight container for up to 3 days.

Extra Tips

  1. Pressing the indent both before and after baking ensures a defined well for the ganache filling.
  2. Scooting cookies in a circular motion with a round cutter while still warm creates uniform shapes.
  3. Cookies can be served slightly chilled for a firmer ganache texture.

What You’ll Need

  • Electric mixer or stand mixer with paddle attachment
  • Mixing bowls
  • Measuring spoons and cups
  • Rubber spatula
  • Baking sheets
  • Parchment paper
  • Wire cooling rack
  • Saucepan
  • Cookie scoop (1 tablespoon size)
  • Round cookie cutter

Allergen Information

Double-check ingredients for allergens and consult a professional if needed.
  • Contains gluten (wheat), dairy, eggs, and may contain traces of nuts depending on chocolate brand.

Nutritional Information (Per Serving)

This info is for reference only and shouldn’t replace professional health advice.
  • Calories: 145
  • Fats: 7.2 grams
  • Carbs: 18.5 grams
  • Proteins: 1.7 grams